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XNeat Windows Manager

Free - X Neat Software
XNeat is taskbar utility in the must have list. XNeat gives you full control by extending Windows' features:
1) Stay On Top: Always On Top windows will never be overlapped by other windows.
2) Show/Hide System Tray Icon found beside windows' system clock.
3) Show/Hide Windows on your desktop
4) TaskBar Utility [Manager-Sorter]: Arrange taskbar's items
always on top, minimize to tray, minimize, desktop, transparent, windows, priority, stay on top, multi monitor, resize, caption
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SpeedTextPad

$30.00 - S & M Design Services
SpeedTextPad is a specialized text editor designed specifically for free-writing. Besides standard text editor functions, specialized features include: Always on Top window, remembers window size and position, invisible ink to avoid distraction while free-writing, built-in customizable timer with sound and dialog alert, and standard Courier 10 points font. It can be run from the hard disk or from a USB drive and does not use the Windows registry.
align, window, timer, time, copy, enhancement, tray, stayontop, shell, hide program, hide window
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ALTZ

$24.95 - Bidgood Svcs
Keep a small video or messenger always stay on top while you work, Boss shows up, completely hide it and mute the speakers. When the Boss leaves, bring it all back and continue on. Great for applications such as Windows Media Player, Quick Time, VLC Player, Aim Messenger, Yahoo Messenger, MSN Live Messenger, Facebook, Solitaire, YouTube, WordPad, Notepad, Internet Explorer or Fire Fox web browser, photos, webmail, web cam and much much more.
topmost, virtual desktop, icon, text, send to tray, taskbar, translucent, transparency, change, console, automate
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Actual Window Guard

$29.95 - Actual Tools
Actual Window Guard is simple solution for optimizing your workspace. Use it to always keep all windows on the desktop in the order you like. It can automatically set windows’ position and size, minimize and maximize windows on startup, align them, close irrelevant pop-ups, keep windows on top and prevent them from accidental closing. The tool runs on all Windows platforms, works with x64 applications and manages command prompt windows as well.
affinity, popup, maximize, close, startup, clock, transparent window, title, buttons, rollup, titlebuttons
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HeldUp

Free - JohnMacIntyre.ca
HeldUp keeps any program in full view even when working in another.
HeldUp is EASY. Just to drag the HeldUp icon onto any software you want to keep on top. It doesn't get much easier than that!
HeldUp is SMALL. It's written in C++ without resource hungry components, so HeldUp is using as little system resources as possible. The entire application is less than 70kb and will probably be one of the smallest programs on your PC.
unroll, ghost, paste, management, system wide, hot keys, desktop utility, window managers, keyboard, system tray, tracker
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Daphne

Free - DRK Open Source Software
Daphne is a small (system tray) application for killing, controlling and debuging window's processes. You can kill a process by dragging the mouse over the windows, by right-clicking the process in the main process list, or by typing its name with the "Kill all by name" command. You can set a any window to be always on top, to be transparent, to be enable, et cetera.
timekeeper, timekeeping, keeping, stopwatch, keeper, down, count, chronometer, watch, alarm, cooking
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