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Actual Window Guard

$29.95 - Actual Tools
Actual Window Guard is simple solution for optimizing your workspace. Use it to always keep all windows on the desktop in the order you like. It can automatically set windows’ position and size, minimize and maximize windows on startup, align them, close irrelevant pop-ups, keep windows on top and prevent them from accidental closing. The tool runs on all Windows platforms, works with x64 applications and manages command prompt windows as well.
windows, minimize, always on top, desktop, minimize to tray, window, transparent, priority, stay on top, multi monitor, resize, buttons
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Daphne

Free - DRK Open Source Software
Daphne is a small (system tray) application for killing, controlling and debuging window's processes. You can kill a process by dragging the mouse over the windows, by right-clicking the process in the main process list, or by typing its name with the "Kill all by name" command. You can set a any window to be always on top, to be transparent, to be enable, et cetera.
icon, tray, translucent, transparency, caption, align, stayontop, taskbar, change, enhancement, keyboard, console
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JumpKeys

$22.95 - Bruce Graham
A utility that uses hot keys for selecting (switching between) windows, minimizing, maximizing, and making windows Always On Top. JumpKeys gives you instant control over your desktop windows. Quickly tag up to 9 windows - on full/partial title - to be selected using the numbers on the main keyboard with the Alt key (Alt+1, Alt+2, and so on), or the Ctrl/Shift/Windows key, or the numbers alone. Cycle through multiple instances of a tagged window.
automate, affinity, popup, maximize, close, startup, send to tray, copy, virtual desktop, application, management, unroll
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Taskbar Hide - hide windows program

$19.95 - Eusing Software
With Taskbar Hide you can fully control the taskbar.Hide windows program (hide applications) or close them completely through a hotkey,or minimize them to system tray.Hide some less used icons from system tray.Reorder the windows on taskbar based on your choice.Change the icon and title of any window.Automatically maximize all new windows or only new IE windows.Set any application window always on top or show it's property.
shell, topmost, system wide, hot keys, desktop utility, window managers, hide, hide program, hide window, manager, timer, time
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Actual Window Manager

$49.95 - Actual Tools
Actual Window Manager is a desktop productivity suite of over 50 tools that lets users change their interaction with windows in many new exciting ways: minimize windows to tray or to a small icon on the desktop, apply transparency, roll up, pin on top, auto-align windows, resize, etc. Any of these operations (and many others) can be done either automatically or manually in a click on the new title bar buttons added after installation.
transparent window, title, rollup, titlebuttons, ghost, paste, desktop extension, windows manager, roll up down, arranger, taskbar utility, tray icon
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SpeedTextPad

$30.00 - S & M Design Services
SpeedTextPad is a specialized text editor designed specifically for free-writing. Besides standard text editor functions, specialized features include: Always on Top window, remembers window size and position, invisible ink to avoid distraction while free-writing, built-in customizable timer with sound and dialog alert, and standard Courier 10 points font. It can be run from the hard disk or from a USB drive and does not use the Windows registry.
min to tray, taskbar manager, sorter, always stay on top, open windows, yahoo messenger, aim messenger, msn live messenger, mute microphone, hide taskbar, windows media player, mute speakers
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